Neurodesk

Neurodesk Webapps

Run Neuroimaging Tools in Your Browser

Use practical tools for segmentation, quantitative imaging, quality control, and data preparation—without installing software or uploading your imaging data.

14 apps across 4 categories

01

Segmentation & Analysis

Identify anatomy and pathology, then turn images into useful measurements.

Segmentation & Analysis

MuscleMap

Browser-based muscle segmentation and fat metrics.

  • muscle
  • MRI
  • segmentation
 Segmentation & Analysis

VesselBoost

Browser-based blood-vessel segmentation.

  • blood vessels
  • vasculature
  • MRI
 Segmentation & Analysis

Spinal Cord Toolbox

Browser-native spinal cord MRI segmentation workflows.

  • spinal cord
  • MRI
  • segmentation
 Segmentation & Analysis

CALMaR

Co-designed Automated Lesion Mapping and Reporting.

  • lesion
  • mapping
  • reporting
 Segmentation & Analysis

SeedSeg

Prostate fiducial-marker segmentation in the browser.

  • prostate
  • fiducial marker
  • segmentation

02

Quantitative Imaging

Create maps, derived images, and reproducible quantitative results.

Quantitative Imaging

QSMbly

Quantitative Susceptibility Mapping in the browser.

  • QSM
  • susceptibility
  • phase
 Quantitative Imaging

Easy MP2RAGE T1 Map

Browser-native MP2RAGE T1 mapping, B1 correction, and UNI denoising.

  • MP2RAGE
  • T1 mapping
  • B1 correction
 Quantitative Imaging

NiiMath

Interactive browser-native neuroimaging maths and visualization.

  • NIfTI
  • image maths
  • image processing

03

Data Preparation & Privacy

Convert, compare, and prepare imaging data safely in your browser.

Data Preparation & Privacy

dicompare

DICOM protocol comparison, validation, and schema tooling.

  • DICOM
  • protocol
  • comparison
 Data Preparation & Privacy

Deface

Privacy-preserving MRI defacing entirely in the browser.

  • defacing
  • anonymisation
  • anonymization
 Data Preparation & Privacy

DICOM2Vid

Convert DICOM, NIfTI, or MGZ volumes into scrolling videos in the browser.

  • DICOM
  • NIfTI
  • MGZ

04

Quality Control & Annotation

Review image quality and annotate anatomy with interactive tools.

Quality Control & Annotation

BrowserQC

Automated browser-native MRI segmentation and image-quality metrics.

  • quality control
  • QC
  • MRI
 Quality Control & Annotation

SurfAnnotate

Cortical surface viewer with manual ROI delineation and vertex selection.

  • cortical surface
  • annotation
  • ROI
 Quality Control & Annotation

ZARRo

Stream and explore multiscale OME-Zarr volumes directly in the browser.

  • OME-Zarr
  • Zarr
  • microscopy

Aggregate usage

Webapp analytics

See how many people use each webapp and the countries they access it from. These are aggregate page-view statistics only; Do Not Track and Global Privacy Control are respected.

—People
—Page views
—Countries

Usage by app

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No custom events, filenames, imaging metadata, processing settings, measurements, or results are sent to Google Analytics. Countries with fewer than five visitors are not published.