Run Neuroimaging Tools in Your Browser

Browser-based muscle segmentation and fat metrics.

• muscle
• MRI
• segmentation

Browser-based blood-vessel segmentation.

• blood vessels
• vasculature
• MRI

Browser-native spinal cord MRI segmentation workflows.

• spinal cord
• MRI
• segmentation

Co-designed Automated Lesion Mapping and Reporting.

• lesion
• mapping
• reporting

Prostate fiducial-marker segmentation in the browser.

• prostate
• fiducial marker
• segmentation

Segment brain MRI into FreeSurfer labels locally in your browser.

• SynthSeg
• MRI
• CT

Score which white-matter bundles a lesion disconnects, in the browser.

• lesion
• disconnection
• tractography

Extract the brain and a brain mask with BET, MindGrab or SynthStrip, locally in your browser.

• brain
• skull-stripping
• BET

Segment white matter lesions on a FLAIR image with FLAMeS, locally in your browser.

• FLAIR
• white matter hyperintensities
• WMH

Quantitative Susceptibility Mapping in the browser.

• QSM
• susceptibility
• phase

Browser-native MP2RAGE T1 mapping, B1 correction, and UNI denoising.

• MP2RAGE
• T1 mapping
• B1 correction

Find the carotid arteries in a phase-contrast neck slice and extract their flow curves, in the browser.

• phase contrast
• carotid
• blood flow

Preprocess single-voxel MR spectroscopy with FID-A and quantify metabolites with LCModel, in the browser.

• MRS
• spectroscopy
• LCModel

Browser-native diffusion tensor fitting and GPU streamline tractography.

• diffusion MRI
• DTI
• tractography

Interactive browser-native neuroimaging maths and visualization.

• NIfTI
• image maths
• image processing

Affine MRI registration in the browser with niimath.

• registration
• affine
• NIfTI

Affine and deformable MRI registration in the browser with Greedy.

• registration
• affine
• deformable

Affine and SyN diffeomorphic MRI registration in the browser with ANTs.

• registration
• SyN
• diffeomorphic

Register brain images in the browser with CPU or WebGPU FireANTs.

• FireANTs
• registration
• SyN

Rigid, affine and B-spline registration of MRI, OME-Zarr and TIFF images with elastix, in the browser.

• registration
• elastix
• affine

Normalize brain scans and aligned lesion maps to MNI space.

• SYNcro
• SynthSR
• MindGrab

Privacy-preserving MRI defacing entirely in the browser.

• defacing
• anonymisation
• anonymization

Synthesize a 1 mm T1-weighted brain image locally in your browser.

• SynthSR
• MRI
• CT

Extract the brain and a brain mask with BET, MindGrab or SynthStrip, locally in your browser.

• brain
• skull-stripping
• BET

Reconstruct an isotropic 3D fetal or neonatal brain volume from motion-corrupted 2D MRI stacks in the browser with WebGPU or on a GPU compute server in your network.

• NeSVoR
• SVoRT
• fetal MRI

Convert DICOM, NIfTI, or MGZ volumes into scrolling videos in the browser.

• DICOM
• NIfTI
• MGZ

Cortical surface viewer with manual ROI delineation and vertex selection.

• cortical surface
• annotation
• ROI

Stream and explore multiscale OME-Zarr volumes directly in the browser.

• OME-Zarr
• Zarr
• microscopy

Create printable brain meshes from NIfTI or DICOM scans in your browser.

• brain
• mri
• segmentation

Reconstruct cortical white, pial, and registration surfaces locally from a brain MRI.

• TopoFit
• cortical surface
• MRI

Cortical surface viewer with manual ROI delineation and vertex selection.

• cortical surface
• annotation
• ROI

Reconstruct cortical white, pial, and registration surfaces locally from a brain MRI.

• TopoFit
• cortical surface
• MRI

DICOM protocol comparison, validation, and schema tooling.

• DICOM
• protocol
• comparison

Automated browser-native MRI segmentation and image-quality metrics.

• quality control
• QC
• MRI