Neurodesk Webapps
Run Neuroimaging Tools in Your Browser
Segment, register, measure, prepare, and explore imaging data in your browser without installing software or uploading your scans.
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01
Segmentation & Analysis
Identify anatomy and pathology, then turn images into useful measurements.
Segmentation & Analysis
MuscleMap
Browser-based muscle segmentation and fat metrics.
Segmentation & AnalysisVesselBoost
Browser-based blood-vessel segmentation.
Segmentation & AnalysisSpinal Cord Toolbox
Browser-native spinal cord MRI segmentation workflows.
Segmentation & AnalysisCALMaR
Co-designed Automated Lesion Mapping and Reporting.
Segmentation & AnalysisSeedSeg
Prostate fiducial-marker segmentation in the browser.
Segmentation & AnalysisSynthSeg
Segment brain MRI into FreeSurfer labels.
Segmentation & AnalysisDisconnectome
Score which white-matter bundles a lesion disconnects.
Segmentation & AnalysisBrain extraction
Brain extraction with BET, MindGrab or SynthStrip.
Segmentation & AnalysisWhite matter lesions
Segment white matter lesions on FLAIR with FLAMeS.
02
Quantitative Imaging
Create maps, derived images, and reproducible quantitative results.
Quantitative Imaging
QSMbly
Quantitative Susceptibility Mapping in the browser.
Quantitative ImagingEasy MP2RAGE T1 Map
MP2RAGE T1 mapping, B1 correction and denoising.
Quantitative ImagingCarotid Flow
Carotid artery flow curves from phase-contrast MRI.
Quantitative ImagingLCModel
Single-voxel MRS quantification with FID-A and LCModel.
03
Diffusion Imaging
Fit diffusion models and reconstruct white-matter pathways.
04
Image Processing
Transform images and apply image maths and statistical operations.
05
Registration
Align images with each other.
Registration
EdgeReg
Affine MRI registration in the browser with niimath.
RegistrationGreedy
Affine and deformable MRI registration with Greedy.
RegistrationANTs
Affine and SyN diffeomorphic MRI registration with ANTs.
RegistrationFireANTs
Register brain images with CPU or WebGPU FireANTs.
Registrationelastix
Rigid, affine and B-spline registration with elastix.
06
Normalization
Normalize scans and aligned maps to a standard reference space.
07
Data Preparation & Privacy
Convert images, improve resolution, and remove identifying facial features.
Data Preparation & Privacy
Deface
Privacy-preserving MRI defacing entirely in the browser.
Data Preparation & PrivacySynthSR
Synthesize a 1 mm T1-weighted image from brain MRI or CT.
Data Preparation & PrivacyBrain extraction
Brain extraction with BET, MindGrab or SynthStrip.
Data Preparation & PrivacyNeSVoR
Reconstruct a 3D fetal or neonatal brain from 2D MRI stacks.
08
Visualization
Explore volumes and surfaces and create videos and printable views.
Visualization
MRI2VID
Convert DICOM, NIfTI or MGZ volumes into scrolling videos.
VisualizationSurfAnnotate
Cortical surface viewer for ROI and vertex annotation.
VisualizationZARRo
Stream and explore multiscale OME-Zarr volumes.
VisualizationBrain2Print
Create printable brain meshes from NIfTI or DICOM scans.
VisualizationTopoFit
Reconstruct cortical white, pial and registration surfaces.
VisualizationDICOM View
Browse DICOM series, images, headers and protocol.
09
Surfaces
Reconstruct cortical surfaces and annotate surface regions.
10
Quality Control
Check image quality and compare acquisition protocols.
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Aggregate usage
Webapp analytics
See how many people use each webapp and the countries they access it from. These are aggregate page-view statistics only; Do Not Track and Global Privacy Control are respected.
Usage by app
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